Published articles

• (2026) K. Roeder, G. Stirnemann, L. Meuret, D. Barquero-Morera, S. Forget, D. J. Wales, and S. Pasquali, “Exploring RNA conformational ensembles in silico: progress and challenges,” Feb. 2026. (available here)
• (2025) D. Barquero-Morera, G. Mattiotti, A. Kocev, A. Rousselot, L. Meuret, L. Rouaud, H. Santuz, M. Baaden, A. Taly, and S. Pasquali, “Statistical Molecular Interaction Fields: A Fast and Informative Tool for Characterizing RNA and Protein-Binding Pockets,” Journal of Chemical Theory and Computation, vol. 21, pp. 9120–9135, Sept. 2025. (available here)
• (2022) E. Arias-Méndez, D. Barquero-Morera, and F. J. Torres-Rojas, “Low-Cost Algorithms for Metabolic Pathway Pairwise Comparison,” Biomimetics, vol. 7, p. 27, Feb. 2022. (available here)

Articles in preparation

• Analysis of binding pockets in HIV-2 trans-activating region (TAR) RNA. (name subject to changes)
• HiRE2: High-resolution coarse-grained RNA model for structural dynamics.
• SpokeR: SMIF (Statistical Molecular Interaction Fields) driven pocket detection in RNA. (name subject to changes)
• Classification of RNA binding pockets and insights for Drug Design.

Participation in conferences

• 2025 December, Marseille (France). Attended winter school. Algorithms in Structural Bioinformatics (AlgoSB): Structure modeling and design towards RNA-based therapeutics.
• 2025 October, Cargèse (France). Talk. Biophysical modeling of the structure and function of viruses, CECAM.
• 2025 June, Forge-Les-Eaux (France). Poster communication. The Group of Graphism and Molecular Modelling (GGMM) congress.
• 2025 May, Paris (France). Talk. Atelier de Modélisation des Molécules d'Intérêt Biologique de Paris-Saclay (AMMIB).
• 2024 April, Paris (France). Poster communication. Atelier de Modélisation des Molécules d'Intérêt Biologique de Paris-Saclay (AMMIB).